GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sitalica_Seita.1G282000 Seita.1G282000	scaffold_1	35276931	35278002	Phytozome	v2.2	Setaria_italica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sitalica_Seita.1G282000.1 Seita.1G282000.1 PAC:32696507	Low	Yes	952		Get ORF Coding potential... Type: noncoding Potential: -0.707 Folding energies... MFEI: -32.595 AMFE: -0.614 GC content %: 53.046
Sitalica_Seita.1G282000.2 Seita.1G282000.2 PAC:32696508	Low	Yes	871		Get ORF Coding potential... Type: noncoding Potential: -0.735 Folding energies... MFEI: -33.238 AMFE: -0.606 GC content %: 54.879

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).