Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Sitalica_Seita.2G107000 Seita.2G107000 |
scaffold_2 | 10332084 | 10332724 | Phytozome | v2.2 | Setaria_italica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Sitalica_Seita.2G107000.1 Seita.2G107000.1 PAC:32722021 |
Low | Yes | 641 | Get ORF Coding potential... Type: noncoding Potential: -0.623 Folding energies... MFEI: -39.095 AMFE: -0.694 GC content %: 56.318 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Sitalica_Seita.2G107000.1 | SwissProt | 2015-06-01 | Q8W453 | 1.0e-10 |