Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Sitalica_Seita.2G135000 Seita.2G135000 |
scaffold_2 | 15533456 | 15535817 | Phytozome | v2.2 | Setaria_italica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Sitalica_Seita.2G135000.1 Seita.2G135000.1 PAC:32721164 |
High | No | 737 | Get ORF Coding potential... Type: noncoding Potential: -0.459 Folding energies... MFEI: -30.312 AMFE: -0.633 GC content %: 47.897 | |
Sitalica_Seita.2G135000.2 Seita.2G135000.2 PAC:32721166 |
Low | No | 694 | Get ORF Coding potential... Type: noncoding Potential: -0.443 Folding energies... MFEI: -31.268 AMFE: -0.613 GC content %: 51.009 | |
Sitalica_Seita.2G135000.3 Seita.2G135000.3 PAC:32721165 |
High | No | 564 | Get ORF Coding potential... Type: noncoding Potential: -0.384 Folding energies... MFEI: -31.649 AMFE: -0.601 GC content %: 52.660 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Sitalica_Seita.2G135000.2 | RepBase (RepeatMasker) | 2014-01-31 | STOWAWAY1_SB |