Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Sitalica_Seita.3G049700 Seita.3G049700 |
scaffold_3 | 3095941 | 3099437 | Phytozome | v2.2 | Setaria_italica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Sitalica_Seita.3G049700.2 Seita.3G049700.2 PAC:32711528 |
High | No | 2080 | Get ORF Coding potential... Type: noncoding Potential: -1.293 Folding energies... MFEI: -34.332 AMFE: -0.664 GC content %: 51.683 | |
Sitalica_Seita.3G049700.3 Seita.3G049700.3 PAC:32711526 |
Low | Yes | 1944 | Get ORF Coding potential... Type: noncoding Potential: -1.291 Folding energies... MFEI: -35.262 AMFE: -0.678 GC content %: 52.006 | |
Sitalica_Seita.3G049700.4 Seita.3G049700.4 PAC:32711527 |
High | No | 1988 | Get ORF Coding potential... Type: noncoding Potential: -1.292 Folding energies... MFEI: -34.748 AMFE: -0.669 GC content %: 51.962 |