Gene

Sitalica Seita.3G049700

From GreeNC


Gene information
Help.png

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Sitalica_Seita.3G049700
Seita.3G049700
scaffold_3 3095941 3099437 Phytozome v2.2 Setaria_italica
Coding?
No


Transcript features
Help.png

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Sitalica_Seita.3G049700.2
Seita.3G049700.2
PAC:32711528
High No 2080
Coding potential...
Type: noncoding Potential: -1.293
Folding energies...
MFEI: -34.332 AMFE: -0.664
GC content
%: 51.683
Sitalica_Seita.3G049700.3
Seita.3G049700.3
PAC:32711526
Low Yes 1944
Coding potential...
Type: noncoding Potential: -1.291
Folding energies...
MFEI: -35.262 AMFE: -0.678
GC content
%: 52.006
Sitalica_Seita.3G049700.4
Seita.3G049700.4
PAC:32711527
High No 1988
Coding potential...
Type: noncoding Potential: -1.292
Folding energies...
MFEI: -34.748 AMFE: -0.669
GC content
%: 51.962


Gene models
Help.png

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

Seita.3G049700.png