GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sitalica_Seita.4G266900 Seita.4G266900	scaffold_4	38473168	38475870	Phytozome	v2.2	Setaria_italica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sitalica_Seita.4G266900.1 Seita.4G266900.1 PAC:32709071	High	No	2337		Get ORF Coding potential... Type: noncoding Potential: -0.730 Folding energies... MFEI: -30.556 AMFE: -0.669 GC content %: 45.700
Sitalica_Seita.4G266900.2 Seita.4G266900.2 PAC:32709072	High	No	2116		Get ORF Coding potential... Type: noncoding Potential: -0.720 Folding energies... MFEI: -31.616 AMFE: -0.669 GC content %: 47.259

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).