GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sitalica_Seita.5G115900 Seita.5G115900	scaffold_5	9642570	9644547	Phytozome	v2.2	Setaria_italica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sitalica_Seita.5G115900.1 Seita.5G115900.1 PAC:32684978	High	No	598		Get ORF Coding potential... Type: noncoding Potential: -1.211 Folding energies... MFEI: -25.385 AMFE: -0.600 GC content %: 42.308
Sitalica_Seita.5G115900.2 Seita.5G115900.2 PAC:32684979	High	No	509		Get ORF Coding potential... Type: noncoding Potential: -1.058 Folding energies... MFEI: -25.953 AMFE: -0.638 GC content %: 40.668
Sitalica_Seita.5G115900.3 Seita.5G115900.3 PAC:32684980	High	No	506		Get ORF Coding potential... Type: noncoding Potential: -1.062 Folding energies... MFEI: -25.830 AMFE: -0.638 GC content %: 40.514

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).