Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Sitalica_Seita.5G439700 Seita.5G439700 |
scaffold_5 | 45566481 | 45567047 | Phytozome | v2.2 | Setaria_italica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Sitalica_Seita.5G439700.1 Seita.5G439700.1 PAC:32681048 |
Low | No | 303 | Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -22.475 AMFE: -0.493 GC content %: 45.545 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Sitalica_Seita.5G439700.1 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-36_ZM |