GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sitalica_Seita.6G081600 Seita.6G081600	scaffold_6	7307555	7309026	Phytozome	v2.2	Setaria_italica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sitalica_Seita.6G081600.1 Seita.6G081600.1 PAC:32699379	High	No	724		Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -25.318 AMFE: -0.621 GC content %: 40.746
Sitalica_Seita.6G081600.2 Seita.6G081600.2 PAC:32699380	High	No	461		Get ORF Coding potential... Type: noncoding Potential: -0.864 Folding energies... MFEI: -26.226 AMFE: -0.633 GC content %: 41.432

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).