GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sitalica_Seita.7G332500 Seita.7G332500	scaffold_7	35772384	35773494	Phytozome	v2.2	Setaria_italica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sitalica_Seita.7G332500.1 Seita.7G332500.1 PAC:32703496	High	No	760		Get ORF Coding potential... Type: noncoding Potential: -0.795 Folding energies... MFEI: -35.250 AMFE: -0.671 GC content %: 52.500
Sitalica_Seita.7G332500.2 Seita.7G332500.2 PAC:32703497	High	No	864		Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -34.826 AMFE: -0.679 GC content %: 51.273

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).