GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sitalica_Seita.8G055400 Seita.8G055400	scaffold_8	4896423	4897759	Phytozome	v2.2	Setaria_italica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sitalica_Seita.8G055400.1 Seita.8G055400.1 PAC:32716043	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -31.901 AMFE: -0.694 GC content %: 45.957
Sitalica_Seita.8G055400.2 Seita.8G055400.2 PAC:32716044	High	No	1171		Get ORF Coding potential... Type: noncoding Potential: -1.120 Folding energies... MFEI: -30.196 AMFE: -0.696 GC content %: 43.382
Sitalica_Seita.8G055400.3 Seita.8G055400.3 PAC:32716045	High	No	732		Get ORF Coding potential... Type: noncoding Potential: -1.130 Folding energies... MFEI: -31.803 AMFE: -0.691 GC content %: 46.038

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).