Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Sitalica_Seita.8G058700 Seita.8G058700 |
scaffold_8 | 5295178 | 5298444 | Phytozome | v2.2 | Setaria_italica | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Sitalica_Seita.8G058700.1 Seita.8G058700.1 PAC:32715209 |
Low | No | 842 | Get ORF Coding potential... Type: noncoding Potential: -1.263 Folding energies... MFEI: -27.625 AMFE: -0.614 GC content %: 45.012 | |
Sitalica_Seita.8G058700.2 Seita.8G058700.2 PAC:32715212 |
High | No | 859 | Get ORF Coding potential... Type: noncoding Potential: -1.296 Folding energies... MFEI: -31.467 AMFE: -0.633 GC content %: 49.709 | |
Sitalica_Seita.8G058700.3 Seita.8G058700.3 PAC:32715211 |
Low | No | 717 | Get ORF Coding potential... Type: noncoding Potential: -1.344 Folding energies... MFEI: -29.093 AMFE: -0.630 GC content %: 46.165 | |
Sitalica_Seita.8G058700.4 Seita.8G058700.4 PAC:32715213 |
Low | No | 829 | Get ORF Coding potential... Type: noncoding Potential: -1.358 Folding energies... MFEI: -28.215 AMFE: -0.620 GC content %: 45.476 | |
Sitalica_Seita.8G058700.5 Seita.8G058700.5 PAC:32715210 |
Low | No | 730 | Get ORF Coding potential... Type: noncoding Potential: -1.231 Folding energies... MFEI: -28.397 AMFE: -0.623 GC content %: 45.616 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Sitalica_Seita.8G058700.3 | RepBase (RepeatMasker) | 2014-01-31 | hAT-14N1_ZM | |
Sitalica_Seita.8G058700.4 | RepBase (RepeatMasker) | 2014-01-31 | hAT-14N1_ZM | |
Sitalica_Seita.8G058700.5 | RepBase (RepeatMasker) | 2014-01-31 | hAT-14N1_ZM | |
Sitalica_Seita.8G058700.1 | RepBase (RepeatMasker) | 2014-01-31 | hAT-14N1_ZM |