GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Sitalica_Seita.9G084800 Seita.9G084800	scaffold_9	5068952	5071362	Phytozome	v2.2	Setaria_italica	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Sitalica_Seita.9G084800.1 Seita.9G084800.1 PAC:32687333	High	No	1017		Get ORF Coding potential... Type: noncoding Potential: -0.925 Folding energies... MFEI: -33.628 AMFE: -0.603 GC content %: 55.752
Sitalica_Seita.9G084800.2 Seita.9G084800.2 PAC:32687334	High	No	1021		Get ORF Coding potential... Type: noncoding Potential: -0.933 Folding energies... MFEI: -33.692 AMFE: -0.605 GC content %: 55.730
Sitalica_Seita.9G084800.3 Seita.9G084800.3 PAC:32687335	High	No	941		Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -34.718 AMFE: -0.616 GC content %: 56.323
Sitalica_Seita.9G084800.4 Seita.9G084800.4 PAC:32687336	High	No	937		Get ORF Coding potential... Type: noncoding Potential: -0.918 Folding energies... MFEI: -34.696 AMFE: -0.616 GC content %: 56.350

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).