GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Spolyrhiza_Spipo0G0012800 Spipo0G0012800	pseudo0	909143	909491	Phytozome	v2	Spirodela_polyrhiza	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Spolyrhiza_Spipo0G0012800 Spipo0G0012800 PAC:31508230	High	No	261		Get ORF Coding potential... Type: noncoding Potential: -0.964 Folding energies... MFEI: -38.659 AMFE: -0.686 GC content %: 56.322

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).