Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Spolyrhiza_Spipo0G0017300 Spipo0G0017300 |
pseudo0 | 1363296 | 1376325 | Phytozome | v2 | Spirodela_polyrhiza | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Spolyrhiza_Spipo0G0017300 Spipo0G0017300 PAC:31508601 |
Low | No | 351 | Get ORF Coding potential... Type: noncoding Potential: -0.264 Folding energies... MFEI: -24.160 AMFE: -0.562 GC content %: 43.020 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Spolyrhiza_Spipo0G0017300 | RepBase (RepeatMasker) | 2014-01-31 | Athila0_I-int |