Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Spolyrhiza_Spipo0G0169600 Spipo0G0169600 |
pseudo0 | 10859558 | 10861206 | Phytozome | v2 | Spirodela_polyrhiza | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Spolyrhiza_Spipo0G0169600 Spipo0G0169600 PAC:31508423 |
Low | No | 279 | Get ORF Coding potential... Type: noncoding Potential: -0.119 Folding energies... MFEI: -21.685 AMFE: -0.535 GC content %: 40.502 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Spolyrhiza_Spipo0G0169600 | SwissProt | 2015-06-01 | Q42572 | 2.0e-12 |