Gene

Spolyrhiza Spipo11G0055800

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Spolyrhiza_Spipo11G0055800
Spipo11G0055800
pseudo11 4053757 4054333 Phytozome v2 Spirodela_polyrhiza
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Spolyrhiza_Spipo11G0055800
Spipo11G0055800
PAC:31522419
High No 417
Coding potential...
Type: noncoding Potential: -0.901
Folding energies...
MFEI: -28.681 AMFE: -0.567
GC content
%: 50.600


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

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