GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Spolyrhiza_Spipo3G0071800 Spipo3G0071800	pseudo3	5435669	5441030	Phytozome	v2	Spirodela_polyrhiza	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Spolyrhiza_Spipo3G0071800 Spipo3G0071800 PAC:31513525	High	No	300		Get ORF Coding potential... Type: noncoding Potential: -0.239 Folding energies... MFEI: -27.600 AMFE: -0.524 GC content %: 52.667

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).