Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Spolyrhiza_Spipo4G0070800 Spipo4G0070800 |
pseudo4 | 5983285 | 5986134 | Phytozome | v2 | Spirodela_polyrhiza | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Spolyrhiza_Spipo4G0070800 Spipo4G0070800 PAC:31504152 |
Low | No | 705 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -29.589 AMFE: -0.621 GC content %: 47.660 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Spolyrhiza_Spipo4G0070800 | SwissProt | 2015-06-01 | Q6GNT2 | 2.0e-9 |