GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Spolyrhiza_Spipo9G0018600 Spipo9G0018600	pseudo9	1396683	1397361	Phytozome	v2	Spirodela_polyrhiza	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Spolyrhiza_Spipo9G0018600 Spipo9G0018600 PAC:31514330	High	No	270		Get ORF Coding potential... Type: noncoding Potential: -0.908 Folding energies... MFEI: -36.370 AMFE: -0.646 GC content %: 56.296

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).