GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400000191 PGSC0003DMG400000191	chr01	78759106	78762298	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400000548 PGSC0003DMT400000548 PAC:24423592	High	No	2375		Get ORF Coding potential... Type: noncoding Potential: -0.481 Folding energies... MFEI: -24.484 AMFE: -0.667 GC content %: 36.716
Stuberosum_PGSC0003DMT400000549 PGSC0003DMT400000549 PAC:24423593	High	No	674		Get ORF Coding potential... Type: noncoding Potential: -0.218 Folding energies... MFEI: -25.401 AMFE: -0.625 GC content %: 40.653

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).