Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400000254 PGSC0003DMG400000254 |
chr01 | 77901936 | 77903163 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400000703 PGSC0003DMT400000703 PAC:24418120 |
Low | No | 1228 | Get ORF Coding potential... Type: noncoding Potential: -1.244 Folding energies... MFEI: -19.992 AMFE: -0.538 GC content %: 37.134 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400000703 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-21_ST-LTR |