Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400000763 PGSC0003DMG400000763 |
chr02 | 45625454 | 45625886 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400002009 PGSC0003DMT400002009 PAC:24428925 |
Low | No | 360 | Get ORF Coding potential... Type: noncoding Potential: -0.436 Folding energies... MFEI: -23.056 AMFE: -0.589 GC content %: 39.167 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400002009 | RepBase (RepeatMasker) | 2014-01-31 | MuDR-5_STu |