GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400001581 PGSC0003DMG400001581	chr02	60950593	60955455	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400004016 PGSC0003DMT400004016 PAC:24424536	High	No	1540		Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -20.316 AMFE: -0.613 GC content %: 33.117
Stuberosum_PGSC0003DMT400004017 PGSC0003DMT400004017 PAC:24424537	High	No	1015		Get ORF Coding potential... Type: noncoding Potential: -1.245 Folding energies... MFEI: -19.485 AMFE: -0.612 GC content %: 31.823

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).