Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400003107 PGSC0003DMG400003107 |
chr01 | 89451368 | 89452619 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400008037 PGSC0003DMT400008037 PAC:24418667 |
Low | No | 755 | Get ORF Coding potential... Type: noncoding Potential: -1.508 Folding energies... MFEI: -18.278 AMFE: -0.496 GC content %: 36.821 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400008037 | SwissProt | 2015-06-01 | Q9FR53 | 1.0e-22 |