Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400003607 PGSC0003DMG400003607 |
chr02 | 62242628 | 62245164 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400009295 PGSC0003DMT400009295 PAC:24428102 |
Low | No | 2350 | Get ORF Coding potential... Type: noncoding Potential: -1.179 Folding energies... MFEI: -20.528 AMFE: -0.604 GC content %: 34.000 | |
Stuberosum_PGSC0003DMT400009296 PGSC0003DMT400009296 PAC:24428101 |
High | No | 1553 | Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -19.317 AMFE: -0.578 GC content %: 33.419 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400009295 | SwissProt | 2015-06-01 | Q9FN03 | 6.0e-6 |