GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400003656 PGSC0003DMG400003656	chr02	61096965	61101740	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400009408 PGSC0003DMT400009408 PAC:24426505	High	No	839		Get ORF Coding potential... Type: noncoding Potential: -0.836 Folding energies... MFEI: -14.958 AMFE: -0.492 GC content %: 30.393
Stuberosum_PGSC0003DMT400009410 PGSC0003DMT400009410 PAC:24426503	High	No	1994		Get ORF Coding potential... Type: noncoding Potential: -0.921 Folding energies... MFEI: -19.468 AMFE: -0.628 GC content %: 30.993
Stuberosum_PGSC0003DMT400009411 PGSC0003DMT400009411 PAC:24426504	High	No	747		Get ORF Coding potential... Type: noncoding Potential: -0.821 Folding energies... MFEI: -12.972 AMFE: -0.429 GC content %: 30.254

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).