GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400003867 PGSC0003DMG400003867	chr09	4631323	4636501	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400009861 PGSC0003DMT400009861 PAC:24400953	High	No	201		Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -19.005 AMFE: -0.490 GC content %: 38.806
Stuberosum_PGSC0003DMT400009862 PGSC0003DMT400009862 PAC:24400952	High	No	655		Get ORF Coding potential... Type: noncoding Potential: -0.783 Folding energies... MFEI: -21.481 AMFE: -0.581 GC content %: 36.947

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).