GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400006148 PGSC0003DMG400006148	chr07	41804838	41806571	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400015738 PGSC0003DMT400015738 PAC:24415128	High	No	698		Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -23.109 AMFE: -0.664 GC content %: 34.814
Stuberosum_PGSC0003DMT400015739 PGSC0003DMT400015739 PAC:24415127	High	No	781		Get ORF Coding potential... Type: noncoding Potential: -0.762 Folding energies... MFEI: -23.086 AMFE: -0.651 GC content %: 35.467

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).