Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400006318 PGSC0003DMG400006318 |
chr01 | 72746874 | 72750859 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400016167 PGSC0003DMT400016167 PAC:24421061 |
High | No | 384 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -20.703 AMFE: -0.548 GC content %: 37.760 | |
Stuberosum_PGSC0003DMT400016169 PGSC0003DMT400016169 PAC:24421060 |
High | No | 1032 | Get ORF Coding potential... Type: noncoding Potential: -0.400 Folding energies... MFEI: -24.700 AMFE: -0.657 GC content %: 37.597 |