Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400007053 PGSC0003DMG400007053 |
chr07 | 49705221 | 49711270 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400018172 PGSC0003DMT400018172 PAC:24414892 |
Low | No | 852 | Get ORF Coding potential... Type: noncoding Potential: -1.040 Folding energies... MFEI: -26.115 AMFE: -0.630 GC content %: 41.432 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400018172 | SwissProt | 2015-06-01 | Q9C8L4 | 9.0e-8 |
Stuberosum_PGSC0003DMT400018172 | RepBase (RepeatMasker) | 2014-01-31 | RTE-1_STu |