GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400008056 PGSC0003DMG400008056	chr11	38557812	38558901	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400020822 PGSC0003DMT400020822 PAC:24407366	High	No	1090		Get ORF Coding potential... Type: noncoding Potential: -1.374 Folding energies... MFEI: -19.541 AMFE: -0.653 GC content %: 29.908
Stuberosum_PGSC0003DMT400020823 PGSC0003DMT400020823 PAC:24407367	High	No	579		Get ORF Coding potential... Type: noncoding Potential: -1.431 Folding energies... MFEI: -20.000 AMFE: -0.636 GC content %: 31.434

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).