GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400009155 PGSC0003DMG400009155	chr03	45729238	45732527	Phytozome	v3.4	Solanum_tuberosum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400023661 PGSC0003DMT400023661 PAC:24404040	High	No	462		Get ORF Coding potential... Type: noncoding Potential: -0.515 Folding energies... MFEI: -23.701 AMFE: -0.589 GC content %: 40.260
Stuberosum_PGSC0003DMT400023663 PGSC0003DMT400023663 PAC:24404041	High	No	440		Get ORF Coding potential... Type: noncoding Potential: -0.824 Folding energies... MFEI: -23.386 AMFE: -0.620 GC content %: 37.727

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).