GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400010053 PGSC0003DMG400010053	chr02	66317860	66321075	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400026055 PGSC0003DMT400026055 PAC:24426062	High	No	335		Get ORF Coding potential... Type: noncoding Potential: -0.430 Folding energies... MFEI: -21.672 AMFE: -0.581 GC content %: 37.313
Stuberosum_PGSC0003DMT400026056 PGSC0003DMT400026056 PAC:24426063	High	No	335		Get ORF Coding potential... Type: noncoding Potential: -0.421 Folding energies... MFEI: -22.985 AMFE: -0.592 GC content %: 38.806
Stuberosum_PGSC0003DMT400026057 PGSC0003DMT400026057 PAC:24426064	High	No	331		Get ORF Coding potential... Type: noncoding Potential: -0.402 Folding energies... MFEI: -20.816 AMFE: -0.518 GC content %: 40.181
Stuberosum_PGSC0003DMT400026058 PGSC0003DMT400026058 PAC:24426065	High	No	313		Get ORF Coding potential... Type: noncoding Potential: -0.414 Folding energies... MFEI: -22.780 AMFE: -0.566 GC content %: 40.256

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).