Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400011806 PGSC0003DMG400011806 |
chr02 | 37669859 | 37675816 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400030815 PGSC0003DMT400030815 PAC:24427932 |
Low | No | 1550 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -26.923 AMFE: -0.770 GC content %: 34.968 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400030815 | SwissProt | 2015-06-01 | Q8VY64 | 1.0e-7 |