GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400013448 PGSC0003DMG400013448	chr03	747489	748603	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400034981 PGSC0003DMT400034981 PAC:24403309	High	No	1115		Get ORF Coding potential... Type: noncoding Potential: -1.060 Folding energies... MFEI: -27.659 AMFE: -0.655 GC content %: 42.242
Stuberosum_PGSC0003DMT400034982 PGSC0003DMT400034982 PAC:24403310	High	No	1041		Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -27.291 AMFE: -0.647 GC content %: 42.171

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).