GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400014538 PGSC0003DMG400014538	chr02	32248392	32252517	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400037691 PGSC0003DMT400037691 PAC:24427696	High	No	264		Get ORF Coding potential... Type: noncoding Potential: -0.646 Folding energies... MFEI: -26.553 AMFE: -0.594 GC content %: 44.697
Stuberosum_PGSC0003DMT400037692 PGSC0003DMT400037692 PAC:24427697	High	No	385		Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -21.636 AMFE: -0.613 GC content %: 35.325

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).