Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400015629 PGSC0003DMG400015629 |
chr08 | 20771218 | 20772487 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400040368 PGSC0003DMT400040368 PAC:24391938 |
Low | No | 1270 | Get ORF Coding potential... Type: noncoding Potential: -0.683 Folding energies... MFEI: -23.685 AMFE: -0.688 GC content %: 34.409 | |
Stuberosum_PGSC0003DMT400040369 PGSC0003DMT400040369 PAC:24391939 |
Low | No | 991 | Get ORF Coding potential... Type: noncoding Potential: -0.944 Folding energies... MFEI: -25.197 AMFE: -0.703 GC content %: 35.822 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400040369 | SwissProt | 2015-06-01 | Q0D5B9 | 2.0e-7 |
Stuberosum_PGSC0003DMT400040368 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-2_STu | |
Stuberosum_PGSC0003DMT400040369 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-2_STu | |
Stuberosum_PGSC0003DMT400040368 | SwissProt | 2015-06-01 | Q0D5B9 | 8.0e-8 |