GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400015797 PGSC0003DMG400015797	chr03	19834332	19837637	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400040856 PGSC0003DMT400040856 PAC:24406428	High	No	357		Get ORF Coding potential... Type: noncoding Potential: -0.442 Folding energies... MFEI: -23.389 AMFE: -0.601 GC content %: 38.936
Stuberosum_PGSC0003DMT400040857 PGSC0003DMT400040857 PAC:24406429	High	No	798		Get ORF Coding potential... Type: noncoding Potential: -0.682 Folding energies... MFEI: -24.799 AMFE: -0.669 GC content %: 37.093

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).