Gene

Stuberosum PGSC0003DMG400016452

From GreeNC


Gene information
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This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name Chrom. Start End Source Assembly Species Details

Stuberosum_PGSC0003DMG400016452
PGSC0003DMG400016452
chr02 57602990 57603647 Phytozome v3.4 Solanum_tuberosum
Coding?
No


Transcript features
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This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name Confidence Pre-miRNA Length Sequence Details

Stuberosum_PGSC0003DMT400042427
PGSC0003DMT400042427
PAC:24427463
High No 658
Coding potential...
Type: noncoding Potential: -0.712
Folding energies...
MFEI: -18.921 AMFE: -0.519
GC content
%: 36.474


Gene models
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Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).

PGSC0003DMG400016452.png