Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400017407 PGSC0003DMG400017407 |
chr07 | 41215181 | 41224067 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400044858 PGSC0003DMT400044858 PAC:24414196 |
Low | No | 4463 | Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -24.947 AMFE: -0.658 GC content %: 37.934 | |
Stuberosum_PGSC0003DMT400044859 PGSC0003DMT400044859 PAC:24414197 |
Low | No | 1221 | Get ORF Coding potential... Type: noncoding Potential: -0.715 Folding energies... MFEI: -24.857 AMFE: -0.643 GC content %: 38.657 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400044858 | SwissProt | 2015-06-01 | Q9M3C8 | 4.0e-16 |
Stuberosum_PGSC0003DMT400044858 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-1_STu | |
Stuberosum_PGSC0003DMT400044859 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-1_STu |