GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400017476 PGSC0003DMG400017476	chr02	41585323	41586847	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400045068 PGSC0003DMT400045068 PAC:24428751	High	No	225		Get ORF Coding potential... Type: noncoding Potential: -0.775 Folding energies... MFEI: -22.000 AMFE: -0.550 GC content %: 40.000
Stuberosum_PGSC0003DMT400045070 PGSC0003DMT400045070 PAC:24428750	High	No	689		Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -23.832 AMFE: -0.654 GC content %: 36.430

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).