Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400017869 PGSC0003DMG400017869 |
chr02 | 38172815 | 38175189 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400046053 PGSC0003DMT400046053 PAC:24427159 |
Low | No | 1159 | Get ORF Coding potential... Type: noncoding Potential: -0.878 Folding energies... MFEI: -25.056 AMFE: -0.690 GC content %: 36.324 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400046053 | SwissProt | 2015-06-01 | Q6YW46 | 4.0e-8 |
Stuberosum_PGSC0003DMT400046053 | RepBase (RepeatMasker) | 2014-01-31 | DNA3-6_STu |