GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400018356 PGSC0003DMG400018356	chr07	44502544	44505484	Phytozome	v3.4	Solanum_tuberosum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400047272 PGSC0003DMT400047272 PAC:24417492	High	No	1849		Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -25.744 AMFE: -0.685 GC content %: 37.588
Stuberosum_PGSC0003DMT400047274 PGSC0003DMT400047274 PAC:24417493	High	No	1236		Get ORF Coding potential... Type: noncoding Potential: -0.804 Folding energies... MFEI: -25.429 AMFE: -0.658 GC content %: 38.673
Stuberosum_PGSC0003DMT400047275 PGSC0003DMT400047275 PAC:24417494	High	No	1244		Get ORF Coding potential... Type: noncoding Potential: -0.839 Folding energies... MFEI: -25.539 AMFE: -0.662 GC content %: 38.585

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).