Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400019008 PGSC0003DMG400019008 |
chr02 | 24075958 | 24076576 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400048923 PGSC0003DMT400048923 PAC:24428263 |
Low | No | 619 | Get ORF Coding potential... Type: noncoding Potential: -0.717 Folding energies... MFEI: -24.184 AMFE: -0.596 GC content %: 40.549 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400048923 | SwissProt | 2015-06-01 | P92555 | 1.0e-6 |
Stuberosum_PGSC0003DMT400048923 | RepBase (RepeatMasker) | 2014-01-31 | VLINE6_VV |