GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400019723 PGSC0003DMG400019723	chr02	58375082	58378939	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400050780 PGSC0003DMT400050780 PAC:24426514	High	No	518		Get ORF Coding potential... Type: noncoding Potential: -0.620 Folding energies... MFEI: -20.463 AMFE: -0.546 GC content %: 37.452
Stuberosum_PGSC0003DMT400050781 PGSC0003DMT400050781 PAC:24426513	High	No	608		Get ORF Coding potential... Type: noncoding Potential: -0.627 Folding energies... MFEI: -21.250 AMFE: -0.562 GC content %: 37.829

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).