GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400021628 PGSC0003DMG400021628	chr09	52935823	52937896	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400055710 PGSC0003DMT400055710 PAC:24400427	High	No	258		Get ORF Coding potential... Type: noncoding Potential: -0.412 Folding energies... MFEI: -27.636 AMFE: -0.580 GC content %: 47.674
Stuberosum_PGSC0003DMT400055711 PGSC0003DMT400055711 PAC:24400426	High	No	810		Get ORF Coding potential... Type: noncoding Potential: -0.588 Folding energies... MFEI: -24.481 AMFE: -0.620 GC content %: 39.506

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).