Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400021733 PGSC0003DMG400021733 |
chr02 | 56874154 | 56874487 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400055953 PGSC0003DMT400055953 PAC:24429248 |
Low | No | 334 | Get ORF Coding potential... Type: noncoding Potential: -0.573 Folding energies... MFEI: -25.090 AMFE: -0.590 GC content %: 42.515 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400055953 | RepBase (RepeatMasker) | 2014-01-31 | EnSpm-7_STu | |
Stuberosum_PGSC0003DMT400055953 | SwissProt | 2015-06-01 | P05502 | 1.0e-10 |