Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400022092 PGSC0003DMG400022092 |
chr07 | 21304851 | 21308031 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400056808 PGSC0003DMT400056808 PAC:24414266 |
Low | No | 3181 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -20.868 AMFE: -0.680 GC content %: 30.682 | |
Stuberosum_PGSC0003DMT400056809 PGSC0003DMT400056809 PAC:24414267 |
Low | No | 3181 | Get ORF Coding potential... Type: noncoding Potential: -1.261 Folding energies... MFEI: -20.868 AMFE: -0.680 GC content %: 30.682 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400056809 | SwissProt | 2015-06-01 | Q9SW09 | 3.0e-22 |
Stuberosum_PGSC0003DMT400056808 | SwissProt | 2015-06-01 | Q9SW09 | 3.0e-22 |