Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400022348 PGSC0003DMG400022348 |
chr02 | 56355428 | 56358716 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400057539 PGSC0003DMT400057539 PAC:24428476 |
Low | No | 1043 | Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -25.753 AMFE: -0.701 GC content %: 36.721 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400057539 | SwissProt | 2015-06-01 | Q9M815 | 1.0e-5 |