Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400024179 PGSC0003DMG400024179 |
chr02 | 43896469 | 43905135 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400062132 PGSC0003DMT400062132 PAC:24425552 |
Low | No | 291 | Get ORF Coding potential... Type: noncoding Potential: -0.262 Folding energies... MFEI: -18.866 AMFE: -0.465 GC content %: 40.550 | |
Stuberosum_PGSC0003DMT400062133 PGSC0003DMT400062133 PAC:24425553 |
Low | No | 625 | Get ORF Coding potential... Type: noncoding Potential: -0.673 Folding energies... MFEI: -22.640 AMFE: -0.595 GC content %: 38.080 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400062132 | SwissProt | 2015-06-01 | Q552P9 | 1.0e-8 |
Stuberosum_PGSC0003DMT400062133 | SwissProt | 2015-06-01 | Q552P9 | 4.0e-8 |